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Preprint Authors Area Date Reviews
Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images P. Khosravi ... I. Hajirasouliha Bioinformatics Oct 2017 R1
Updating the 97% identity threshold for 16S‌ ribosomal RNA OTUs R. C. Edgar, Bioinformatics Sep 2017 R1
Missing Value Imputation Approach for Mass Spectrometry-based Metabolomics Data R. Wei ... Y. Ni Bioinformatics Aug 2017 R1
gkm-DNN: efficient prediction using gapped k-mer features and deep neural networks Z. Cao, S. Zhang, Bioinformatics Jul 2017 R1
Biological classification with RNA-Seq data: Can alternative splicing enhance machine learning classifier? N. T. Johnson ... D. Korkin Bioinformatics Jun 2017 R1
UPS-indel: A Universal Positioning System For Indels M. S. Hasan ... L. Zhang Bioinformatics Jun 2017 R1
A new multi-genomic approach for the study of biogeochemical cycles at global scale: the molecular reconstruction of the sulfur cycle V. D. Anda ... V. Souza Bioinformatics Jun 2017 R1, R2, R3
Squeakr: An Exact and Approximate k-mer Counting System P. Pandey ... R. Patro Bioinformatics Mar 2017 R1
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model R. Luo ... S. Salzberg Bioinformatics Mar 2017 R1
Predicting the phenotype of Mendelian disease missense mutations using amino acid conservation and protein stability change M. T. Chavez, E. O. Perlstein, Bioinformatics Jan 2017 R1
Portable and Error-Free DNA-Based Data Storage S. M. H. T. Yazdi ... O. Milenkovic Bioinformatics Oct 2016 R1
Transformation and model choice for RNA-seq co-expression analysis A. Rau, C. Maugis-Rabusseau, Bioinformatics Jul 2016 R1
sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors W. Chen ... L. Coin Bioinformatics Jul 2016 R1, R2
Scaffolding and Completing Genome Assemblies in Real-time with Nanopore Sequencing M. D. Cao ... L. Coin Bioinformatics May 2016 R1, R2, R3
Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data G. Devailly, A. Mantsoki, A. Joshi Bioinformatics Apr 2016 R1
plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data D. Antipov ... P. Pevzner Bioinformatics Apr 2016 R1
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing M. D. Cao ... L. Coin Bioinformatics Apr 2016 R1
Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets A. Narechania ... P. J. Planet Bioinformatics Mar 2016 R1, R2, R3, R4
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet C. Viner ... M. M. Hoffman Bioinformatics Mar 2016 R1
sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors W. Chen ... L. Coin Bioinformatics Feb 2016 R1, R2
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing M. D. Cao ... L. Coin Bioinformatics Dec 2015 R1, R2, R3, R4, R5, R6
AGOUTI: improving genome assembly and annotation using transcriptome data S. V. Zhang ... M. W. Hahn Bioinformatics Nov 2015 R1, R2, R3
D3M: Detection of differential distributions of methylation patterns Y. Matsui ... T. Shimamura Bioinformatics Aug 2015 R1
Tools and techniques for computational reproducibility S. R. Piccolo ... M. B. Frampton Bioinformatics Jul 2015 R1, R2
Real-time strain typing and analysis of antibiotic resistance potential using Nanopore MinION sequencing M. D. Cao ... L. Coin Bioinformatics May 2015 R1, R2, R3
Improving the Power of Structural Variation Detection by Augmenting the Reference J. Schroeder ... P. Medvedev Bioinformatics May 2015 R1
NxRepair: Error correction in de novo sequence assembly using Nextera mate pairs R. R. Murphy ... O. B. Schulz-Trieglaff Bioinformatics Dec 2014 R1, R2, R3
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM H. Li, Bioinformatics May 2013 R1